Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs59211003 chr5:1786940 C/T 6.4E-8 132 40.57 45.83 19.3 KM Plot
TGCT rs59233924 chr14:71050660 A/G 1.47E-5 133 40.57 56.83 21.43 KM Plot
TGCT rs59268722 chr4:47459281 G/A 0.000131 133 45.83 36.37 51.6 KM Plot
TGCT rs59377495 chr10:1157019 C/T 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs59396476 chr6:28341972 GA/G 0 134 45.83 29.65 0.57 KM Plot
TGCT rs59463904 chr5:42559473 T/C 9.49E-5 132 38.2 63.68 20.23 KM Plot
TGCT rs59487085 chr3:196198043 C/G 0.000143 130 35.4 41.27 43.6 KM Plot
TGCT rs59777512 chr8:20033118 G/A 3.48E-12 132 42.27 41.47 20.6 KM Plot
TGCT rs598324 chr13:21844915 G/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs598754 chr13:21845010 C/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs59876630 chr6:42626147 TACTC/T 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs59928045 chr6:15212678 G/A 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs59974236 chr2:74109686 A/T 2.7E-7 129 40.57 95.37 22.83 KM Plot
TGCT rs60087663 chr7:127745607 A/C 1.25E-13 133 45.47 36.23 17.1 KM Plot
TGCT rs60184496 chr6:28330431 A/G 0 134 45.83 29.65 0.57 KM Plot